BIRDMAn
latest
User Guide
Installing cmdstanpy
Implementing a default model
Implementing a custom model
Diagnosing BIRDMAn models
Writing Stan code
Working with
arviz
Parallelization in BIRDMAn through the Single Feature Model
How BIRDMAn Works
Bayesian inference
Negative binomial models
API
BIRDMAn Model API
Inference Functions
Diagnostics Functions
Summary Functions
Transformation Functions
Stats Functions
Visualization Functions
BIRDMAn
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Index
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Index
A
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B
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C
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E
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F
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H
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L
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M
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N
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P
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R
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S
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T
A
add_parameters() (birdman.model_base.BaseModel method)
B
BaseModel (class in birdman.model_base)
birdman.diagnostics
module
birdman.inference
module
birdman.stats
module
birdman.summary
module
birdman.transform
module
birdman.visualization
module
C
compile_model() (birdman.model_base.BaseModel method)
concatenate_inferences() (in module birdman.inference)
create_regression() (birdman.model_base.BaseModel method)
E
ess() (in module birdman.diagnostics)
F
fit_model() (birdman.model_base.BaseModel method)
fit_to_inference() (in module birdman.inference)
H
hotelling_ttest() (in module birdman.stats)
L
loo() (in module birdman.diagnostics)
M
ModelIterator (class in birdman.model_base)
module
birdman.diagnostics
birdman.inference
birdman.stats
birdman.summary
birdman.transform
birdman.visualization
N
NegativeBinomial (class in birdman.default_models)
NegativeBinomialLME (class in birdman.default_models)
NegativeBinomialLMESingle (class in birdman.default_models)
NegativeBinomialSingle (class in birdman.default_models)
P
plot_parameter_estimates() (in module birdman.visualization)
plot_posterior_predictive_checks() (in module birdman.visualization)
posterior_alr_to_clr() (in module birdman.transform)
R
r2_score() (in module birdman.diagnostics)
rhat() (in module birdman.diagnostics)
S
SingleFeatureModel (class in birdman.model_base)
specify_model() (birdman.model_base.BaseModel method)
stan_var_to_da() (in module birdman.inference)
summarize_posterior() (in module birdman.summary)
T
TableModel (class in birdman.model_base)
to_inference() (birdman.model_base.BaseModel method)